Bioscreencast Screencasts / Tag :: ncbi


2008-04-02
19 views
Tags: promoter, transcription factors, ncbi
Summary:  How to use NCBI MapViewer to pull DNA sequence from the 5 end of a gene to use in a promoter search
2007-06-28
17 views
Tags: pubmed, connotea, greasemonkey , pierre lindenbaum, pubmed2connotea, javascript, citation, ncbi, firefoxaddin, greasemonkey script
Summary:  Greasemonkey script that runs inside firefox browser and adds an Add to connotea icon next to each reference in pubmed
2007-06-28
8 views
Tags: linkout, ncbi, pubmed, library connect, outside tool, inside tool, fulltext, pdf
Summary:  NCBI filter and setting up oustide links using linkout
2007-06-28
14 views
Tags: blast, genome specific blast, microbial genome blast, microbial homolog, bacterial homolog, ncbi
Summary:  Restrict BLAST to specific genome in the database of completed genomes
2007-06-28
45 views
Tags: blast, precompiled, blast link, blink, protein blast, ncbi, ncbi blast
Summary:  Using precompiled blast - the BLAST link blink
2007-06-28
59 views
Tags: homologous proteins, domain architecture, domains in protein, pfam, cdart, ncbi, ring domain
Summary:  Finding homologous proteins with architechture that resembles your protein from the database of conserved domains
2007-06-28
42 views
Tags: cdd, conserved domains, protein domain, cdart , pfam, ncbi
Summary:  Get a list of conserved domains in your protein and also view a sequence alignment and graphic of domain architechture of your protein
2007-06-28
41 views
Tags: rss, pubmed , ncbi, live bookmark, google home page
Summary:  Using personalized Google homepage to show PUBMED search results for topic of interest
2007-06-28
19 views
Tags: toc, ncbi, pubmed, email pubmed result, table of contents
Summary:  Create a custom table of contents(TOC) alert for journal of choice using saved serach feature at NCBI.
2007-06-28
11 views
Tags: filters, ncbi, reviews, pubmed, pubmed
Summary:  Custom filters help you filter or sort PUBMED search results
2007-06-28
17 views
Tags: my ncbi , saved search, email pubmed result, email alert
Summary:  Setting up automatic email of results for query from a selct numbre of journals.
2007-06-28
13 views
Tags: my ncbi, ncbi collections, saved results, pubmed
Summary:  Save NCBI or PUBMED search results to your own collection.
2007-06-28
25 views
Tags: seqbuilder, sequence export, ncbi, genbank file , seqbuilder layout , send to file
Summary:  You can send your sequence from NCBI to a genbank file and use seqbuilder from within the DNAstar suite to examine and analyze your sequence
2007-06-28
57 views
Tags: xml export, ncbi , tinyseqxml, ncbi to excel, excel , sequence export, fasta
Summary:  Export mutliple sequences into XML format for import into microsoft Excel
2007-06-28
35 views
Tags: rss feed, pubmed, rss, literature alert, google home, ncbi , google
Summary:  Create custom Live bookmark or RSS feed for searh results and keep uptodate using feed reader
2007-06-28
8 views
Tags: outside tool, pubmed, full-text, ncbi linkout, ncbi , brandeis library
Summary:  Setup of connecting PUBMED to some libraries using a password validated login available via the library ( outside tool ).
2007-06-28
57 views
Tags: ncbi, search strategy, orf genome query, export genbank file, sequence export, entrez search
Summary:  Using multiple query styles available with NCBI databases to get at information.
2007-06-28
13 views
Tags: refining search, ncbi-refining search, my ncbi, myncbi, saved search ncbi, entrez saved search
Summary:  How do I find out when fresh annotations are added to my newly sequenced organism- Saved searches and email alerts show you how
2007-06-28
27 views
Tags: fasta sequence , swissprot id, ncbi, entrez, send to file
Summary:  Query NCBI/Entrez for swissport id and save fasta sequence to file
2007-06-28
19 views
Tags: refine query, pubmed, preview and index, search strategy, entrez, ncbi
Summary:  Create and refine queries in PUBMED and NCBI databases using Preview and Index
2007-06-28
12 views
Tags: saved search, new citations, pubmed, ncbi
Summary:  Saved searches help one keep track of new publications matching a search criterion
2007-04-01
22 views
Tags: blink, blast, ncbi, homolog, precompiled-blast
Summary:  Precompiled BLAST link at NCBI to look for homologous proteins