http://www.bioscreencast.com Bioscreencast downloads provided by bioscreencast.com. en-us Copyright , SciForward LLC. rss@bioscreencast.com Wed, 17 Oct 07 00:00:00 +0100 Wed, 17 Oct 07 00:00:00 +0100 Bioscreencast In house http://blogs.law.harvard.edu/tech/rss/ http://67.207.145.173/bsc_movwin.php?var1=145&var2=2bbdd9c5a28b99c4676cd011c902ac6f&var3=1024&var4=608 <br /><div style="float:left; right"><img src="http://67.207.145.173/screencasts/145/thumb_2bbdd9c5a28b99c4676cd011c902ac6f.png" width="50" height="50" /></div>Screencast 2.1 - Getting Data (4 min 38 sec | 37 MB)CREATOR TAGS:galaxy,bioinformatics,psu,Pennstate,interactive,reproducible,genomics Wed, 17 Oct 07 00:00:00 +0100 http://67.207.145.173/bsc_movwin.php?var1=145&var2=f740f85591ef7c479a20c2c95c2add89&var3=1024&var4=608 <br /><div style="float:left; right"><img src="http://67.207.145.173/screencasts/145/thumb_f740f85591ef7c479a20c2c95c2add89.png" width="50" height="50" /></div>Screencast 2.2 - Getting ENCODE data (2 min 01 sec | 16 MB) CREATOR TAGS:galaxy,bioinformatics,psu,Pennstate,interactive,reproducible,genomics Wed, 17 Oct 07 00:00:00 +0100 http://67.207.145.173/bsc_movwin.php?var1=145&var2=57d3097fb4c6553f15c3c73fbf564d6d&var3=1024&var4=608 <br /><div style="float:left; right"><img src="http://67.207.145.173/screencasts/145/thumb_57d3097fb4c6553f15c3c73fbf564d6d.png" width="50" height="50" /></div>Screencast 2.3 - Text Manipulations (3 min 48 sec | 19 MB)CREATOR TAGS:galaxy,bioinformatics,psu,Pennstate,interactive,reproducible,genomics Wed, 17 Oct 07 00:00:00 +0100 http://67.207.145.173/bsc_movwin.php?var1=145&var2=29dcbaa55807095d12496f7abb836615&var3=1024&var4=608 <br /><div style="float:left; right"><img src="http://67.207.145.173/screencasts/145/thumb_29dcbaa55807095d12496f7abb836615.png" width="50" height="50" /></div>Screencast 2.4 - Filtering, Sorting, Joining and Comparing (7 min 22 sec | 63 MB) CREATOR TAGS:galaxy,bioinformatics,psu,Pennstate,interactive,reproducible,genomics Wed, 17 Oct 07 00:00:00 +0100 http://67.207.145.173/bsc_movwin.php?var1=145&var2=b7e40c4fc107b44e0fe681e02ea90497&var3=1024&var4=608 <br /><div style="float:left; right"><img src="http://67.207.145.173/screencasts/145/thumb_b7e40c4fc107b44e0fe681e02ea90497.png" width="50" height="50" /></div>Screencast 2.5 - Fetch Multiple Alignments for Genomic Locations (6 min 28 sec | 48 MB)CREATOR TAGS:galaxy,bioinformatics,psu,Pennstate,interactive,reproducible,genomics Wed, 17 Oct 07 00:00:00 +0100 http://67.207.145.173/bsc_movwin.php?var1=145&var2=cc96f56c9981cca00bf7b7dc057b3e9f&var3=1024&var4=608 <br /><div style="float:left; right"><img src="http://67.207.145.173/screencasts/145/thumb_cc96f56c9981cca00bf7b7dc057b3e9f.png" width="50" height="50" /></div>Screencast 2.6 - Filter Multiple Alignments and Convert Formats (7 min 06 sec | 25 MB) CREATOR TAGS:galaxy,bioinformatics,psu,Pennstate,interactive,reproducible,genomics Wed, 17 Oct 07 00:00:00 +0100 http://67.207.145.173/bsc_movwin.php?var1=145&var2=f6484967856c1bc689872523837b5251&var3=1024&var4=608 <br /><div style="float:left; right"><img src="http://67.207.145.173/screencasts/145/thumb_f6484967856c1bc689872523837b5251.png" width="50" height="50" /></div>Screencast 2.7 - Getting Genomic Scores (3 min 26 sec | 26 MB) CREATOR TAGS:galaxy,bioinformatics,psu,Pennstate,interactive,reproducible,genomics Wed, 17 Oct 07 00:00:00 +0100 http://67.207.145.173/bsc_movwin.php?var1=145&var2=eb0c4abd70687625ad3bcbf44319cf6d&var3=1024&var4=608 <br /><div style="float:left; right"><img src="http://67.207.145.173/screencasts/145/thumb_eb0c4abd70687625ad3bcbf44319cf6d.png" width="50" height="50" /></div>Screencast 3.1 - Preparing data (2 min 01 sec | 8 MB) CREATOR TAGS:galaxy,bioinformatics,psu,Pennstate,interactive,reproducible,genomics Wed, 17 Oct 07 00:00:00 +0100 http://67.207.145.173/bsc_movwin.php?var1=145&var2=e34f63debf3d701f8a3c5cd94febd9ab&var3=1024&var4=608 <br /><div style="float:left; right"><img src="http://67.207.145.173/screencasts/145/thumb_e34f63debf3d701f8a3c5cd94febd9ab.png" width="50" height="50" /></div>Screencast 3.2 - Intersect and Subtract (7 min 40 sec | 28 MB)CREATOR TAGS:galaxy,bioinformatics,psu,Pennstate,interactive,reproducible,genomics Wed, 17 Oct 07 00:00:00 +0100 http://67.207.145.173/bsc_movwin.php?var1=145&var2=ed9bdf0c40200c2090be24f367098076&var3=1024&var4=608 <br /><div style="float:left; right"><img src="http://67.207.145.173/screencasts/145/thumb_ed9bdf0c40200c2090be24f367098076.png" width="50" height="50" /></div>Screencast 3.3 - Merge and Concatenate (6 min 23 sec | 41 MB) CREATOR TAGS:galaxy,bioinformatics,psu,Pennstate,interactive,reproducible,genomics Wed, 17 Oct 07 00:00:00 +0100 http://67.207.145.173/bsc_movwin.php?var1=145&var2=e6e70efbdbe693393f591a16ecb6d58e&var3=1024&var4=608 <br /><div style="float:left; right"><img src="http://67.207.145.173/screencasts/145/thumb_e6e70efbdbe693393f591a16ecb6d58e.png" width="50" height="50" /></div>Screencast 3.4 - Base coverage and Complement (2 min 05 sec | 4 MB) CREATOR TAGS:galaxy,bioinformatics,psu,Pennstate,interactive,reproducible,genomics Wed, 17 Oct 07 00:00:00 +0100 http://67.207.145.173/bsc_movwin.php?var1=145&var2=7d58a291356e6fa122bbf2473d24d180&var3=1024&var4=608 <br /><div style="float:left; right"><img src="http://67.207.145.173/screencasts/145/thumb_7d58a291356e6fa122bbf2473d24d180.png" width="50" height="50" /></div>Screencast 3.5 - Coverage (2 min 14 sec | 14 MB) CREATOR TAGS:galaxy,bioinformatics,psu,Pennstate,interactive,reproducible,genomics Wed, 17 Oct 07 00:00:00 +0100 http://67.207.145.173/bsc_movwin.php?var1=145&var2=c6c1cb94a0099f270512f952a825dae4&var3=1024&var4=608 <br /><div style="float:left; right"><img src="http://67.207.145.173/screencasts/145/thumb_c6c1cb94a0099f270512f952a825dae4.png" width="50" height="50" /></div>Screencast 3.6 - Cluster (6 min 44 sec | 30 MB) CREATOR TAGS:galaxy,bioinformatics,psu,Pennstate,interactive,reproducible,genomics Wed, 17 Oct 07 00:00:00 +0100 http://67.207.145.173/bsc_movwin.php?var1=145&var2=d1a9095b3f9afcbd8894881e7f11d004&var3=1024&var4=608 <br /><div style="float:left; right"><img src="http://67.207.145.173/screencasts/145/thumb_d1a9095b3f9afcbd8894881e7f11d004.png" width="50" height="50" /></div>Screencast 3.7 - Join (3 min 36 sec | 36 MB) CREATOR TAGS:galaxy,bioinformatics,psu,Pennstate,interactive,reproducible,genomics Wed, 17 Oct 07 00:00:00 +0100 http://67.207.145.173/bsc_movwin.php?var1=145&var2=3514481a5b3db81df2247cce863dd2bf&var3=1024&var4=608 <br /><div style="float:left; right"><img src="http://67.207.145.173/screencasts/145/thumb_3514481a5b3db81df2247cce863dd2bf.png" width="50" height="50" /></div>Screencast 4.1 - Finding NonGencode ESTs Part A (6 min 51 sec | 54 MB) CREATOR TAGS:galaxy,bioinformatics,psu,Pennstate,interactive,reproducible,genomics Wed, 17 Oct 07 00:00:00 +0100 http://67.207.145.173/bsc_movwin.php?var1=145&var2=ef4e13ecaf2ed0838bcb181d610950a7&var3=1024&var4=608 <br /><div style="float:left; right"><img src="http://67.207.145.173/screencasts/145/thumb_ef4e13ecaf2ed0838bcb181d610950a7.png" width="50" height="50" /></div>Screencast 4.2 - Finding NonGencode ESTs Part B (3 min 48 sec | 32 MB) CREATOR TAGS:galaxy,bioinformatics,psu,Pennstate,interactive,reproducible,genomics Wed, 17 Oct 07 00:00:00 +0100 http://67.207.145.173/bsc_movwin.php?var1=145&var2=ee0056c3393c65a6ef54ecb9356f4b2a&var3=1024&var4=608 <br /><div style="float:left; right"><img src="http://67.207.145.173/screencasts/145/thumb_ee0056c3393c65a6ef54ecb9356f4b2a.png" width="50" height="50" /></div>Screencast 4.3 - Looking for protein-coding transcripts among Non-Gencode ESTs (4 min 48 sec | 56 MB) CREATOR TAGS:galaxy,bioinformatics,psu,Pennstate,interactive,reproducible,genomics Wed, 17 Oct 07 00:00:00 +0100 http://67.207.145.173/bsc_movwin.php?var1=145&var2=be2ce55442f724f3715dc66337ea27bc&var3=1024&var4=608 <br /><div style="float:left; right"><img src="http://67.207.145.173/screencasts/145/thumb_be2ce55442f724f3715dc66337ea27bc.png" width="50" height="50" /></div>Screencast 4.4 - Finding Non-Gencode ESTs under purifying selection (3 min 28 sec | 29 MB)CREATOR TAGS:galaxy,bioinformatics,psu,Pennstate,interactive,reproducible,genomics Wed, 17 Oct 07 00:00:00 +0100 http://67.207.145.173/bsc_movwin.php?var1=145&var2=9cbe66608b1fec496cb3b4384bd9f6c2&var3=1024&var4=608 <br /><div style="float:left; right"><img src="http://67.207.145.173/screencasts/145/thumb_9cbe66608b1fec496cb3b4384bd9f6c2.png" width="50" height="50" /></div>Screencast 5.1 - How to install Galaxy on your machine (3 min 23 sec | 28 MB) CREATOR TAGS:galaxy,bioinformatics,psu,Pennstate,interactive,reproducible,genomics Wed, 17 Oct 07 00:00:00 +0100 http://67.207.145.173/bsc_movwin.php?var1=145&var2=f54a21780416d9e595419c4d07e81775&var3=1024&var4=608 <br /><div style="float:left; right"><img src="http://67.207.145.173/screencasts/145/thumb_f54a21780416d9e595419c4d07e81775.png" width="50" height="50" /></div>Screencast 5.2 - How to add tool to Galaxy (8 min 52 sec | 29 MB) CREATOR TAGS:galaxy,bioinformatics,psu,Pennstate,interactive,reproducible,genomics Wed, 17 Oct 07 00:00:00 +0100 http://67.207.145.173/bsc_movwin.php?var1=145&var2=edb44f122ddbd564acd2decc2c5352c4&var3=1024&var4=608 <br /><div style="float:left; right"><img src="http://67.207.145.173/screencasts/145/thumb_edb44f122ddbd564acd2decc2c5352c4.png" width="50" height="50" /></div>Screencast 6.1 - Getting data from UCSC Table Browser and displaying data in UCSC Genome BrowserCREATOR TAGS:galaxy,bioinformatics,psu,Pennstate,interactive,reproducible,genomics Wed, 17 Oct 07 00:00:00 +0100 http://67.207.145.173/bsc_movwin.php?var1=145&var2=aa4f7b643f7f2b030c66735772e96653&var3=1024&var4=608 <br /><div style="float:left; right"><img src="http://67.207.145.173/screencasts/145/thumb_aa4f7b643f7f2b030c66735772e96653.png" width="50" height="50" /></div>Screencast 6.2 - How you can use Galaxy to display custom track at UCSC Genome Browser CREATOR TAGS:galaxy,bioinformatics,psu,Pennstate,interactive,reproducible,genomics Wed, 17 Oct 07 00:00:00 +0100 http://67.207.145.173/bsc_movwin.php?var1=145&var2=130d8a1157919456960d13088eef5a80&var3=1024&var4=608 <br /><div style="float:left; right"><img src="http://67.207.145.173/screencasts/145/thumb_130d8a1157919456960d13088eef5a80.png" width="50" height="50" /></div>Screencast 7.1 - Prototype: Visualizing alignments with Galaxy and GMAJ CREATOR TAGS:galaxy,bioinformatics,psu,Pennstate,interactive,reproducible,genomics Wed, 17 Oct 07 00:00:00 +0100 http://67.207.145.173/bsc_movwin.php?var1=145&var2=d1400a7b0b66002ef970b84acaed41ca&var3=1024&var4=608 <br /><div style="float:left; right"><img src="http://67.207.145.173/screencasts/145/thumb_d1400a7b0b66002ef970b84acaed41ca.png" width="50" height="50" /></div>Supporting Protocol 3 - Extracting alignments in Galaxy (5 min 12 sec)CREATOR TAGS:galaxy,bioinformatics,psu,Pennstate,interactive,reproducible,genomics Wed, 17 Oct 07 00:00:00 +0100 http://67.207.145.173/bsc_movwin.php?var1=145&var2=0734f3fb99c56a0207ce0d35becd1a7e&var3=1024&var4=608 <br /><div style="float:left; right"><img src="http://67.207.145.173/screencasts/145/thumb_0734f3fb99c56a0207ce0d35becd1a7e.png" width="50" height="50" /></div>Supporting Protocol 4 - Bacterial data in Galaxy (11 min 13 sec) CREATOR TAGS:galaxy,bioinformatics,psu,Pennstate,interactive,reproducible,genomics Wed, 17 Oct 07 00:00:00 +0100